File formats/Sample xjvxl

An example of a file with XJVXL (XML variant of Jmol voxel) format:

<?xml version="1.0"?>
<jvxl version="2.1" Jmol version="Jmol 11.9.7_dev  2009-09-20 12:13">

<jvxlFileTitle>
 #created by Jmol Version 11.9.7_dev  2009-09-20 12:13 on Mon Oct 26 10:55:54  CDT 2009
 boundbox corners {-4.6571665 -4.3279686 -2.95} {4.6571665 4.3279686 2.95} #MEP
</jvxlFileTitle>

<jvxlVolumeData origin="{-4.6571665 -4.3279686 -2.95}">
 <jvxlVolumeVector type="0" count="28" vector="{0.3449753 0.0 0.0}">
 </jvxlVolumeVector>

 <jvxlVolumeVector type="1" count="26" vector="{0.0 0.34623748 0.0}">
 </jvxlVolumeVector>

 <jvxlVolumeVector type="2" count="18" vector="{0.0 0.0 0.3470588}">
 </jvxlVolumeVector>
</jvxlVolumeData>

<jvxlSurfaceSet count="2">
 <jvxlSurface>
  <jvxlSurfaceInfo
    asXML="true"
    cutoff="0.0"
    isCutoffAbsolute="true"
    pointsPerAngstrom="2.8987584"
    isXLowToHigh="false"
    nBytesUncompressedColorData="1008"
    nBytesData="1008"
    colorMapped="true"
    plane="{0.0 1.0 0.0 0.0}"
    precisionColor="true"
    contoured="true"
    nContours="9"
    contourValues="[-3.4028235E38, -0.05, -0.0375, -0.025, -0.012499999, 1.0E-4, 0.012499999, 0.025000002, 3.4028235E38]"
    contourColors="[xff6000] [xffe000] [xf0f000] [x80ff00] [x20ff00] [x00ff60] [x00ffc0] [x00c0ff] [x0060ff]"
    dataMinimum="-0.44280344"
    dataMaximum="0.3196677"
    valueMappedToRed="-0.05"
    valueMappedToBlue="0.05"
    jmolVersion="Jmol 11.9.7_dev  2009-09-20 12:13">
  </jvxlSurfaceInfo>
  <jvxlSurfaceCommand>
    isosurface plane {0 1 0 0} map contour mep dots;
  </jvxlSurfaceCommand>
  <jvxlSurfaceState>
    isosurface ID "isosurface1" noFill mesh dots notFrontOnly contourlines fullylit
  </jvxlSurfaceState>
  <jvxlSurfaceData>
    <jvxlColorData data="W~9 X~6 YXYX~5 W~13 XXY~5 XXWWWWVWWWXXYZ[[ZYXXWWWVVVVWWXZ!^^!ZXWWV~6 WX[_ff_[XWVVVVUUUUVWZb||bZWVU~5 TTTUV!nn!VUTTTUUTTSSRQPOMMOPQRSSTTTSRQPMIA**AIMPQRSTSSQPNJE;##;EJNPQSSSRQOLHC<44<CHLOQRSSRPNKGB=99=BGKNPRSSQPNKGB>;;>BGKNPQSSQPNKGB>;;>BGKNPQSSRPNKGB=99=BGKNPRSSRQOLHC<44<CHLOQRSSSQPNJE;##;EJNPQSSTSRQPMIA**AIMPQRSTTTSSRQPOMMOPQRSSTTUUTTTUV!nn!VUTTTU~5 VWZb||bZWVUUUUVVVVWX[_ff_[XWV~6 WWXZ!^^!ZXWWVVVVWWWXXYZ[[ZYXXWWWVWWWWXXY~5 XXW~8 XXXYYXXXW~9 X~7 W~4 4;E>QM`ary,=@!PxZ.Z.Px@!,=ry`aQME>;4)4E]%Q*[{{[*Q%]E4)s#5Q$eagRRgae$Q5#s^et8noMcffcMon8te^ABKd@W,ykky,W@dKBAwnjs>KH^||^HK>sjnwN6xc]%gboobg%]cx6NzQy=NSK0]]0KSN=yQzLjwi3mpC%%Cpm3iwjL{.zF/kG-##-Gk/Fz.{WU3<ZoO,@@,OoZ<3UW=1[R^luMDDMul^R[1=0yA06Fk2%%2kF60Ay00yA06Fk2%%2kF60Ay0=1[R^luMDDMul^R[1=WU3<ZoO,@@,OoZ<3UW{.zF/kG-##-Gk/Fz.{Ljwi3mpC%%Cpm3iwjLzQy=NSK0]]0KSN=yQzN6xc]%gboobg%]cx6Nwnjs>KH^||^HK>sjnwABKd@W,ykky,W@dKBA^et8noMcffcMon8te^s#5Q$eagRRgae$Q5#s)4E]%Q*[{{[*Q%]E4)4>May=!x..x!=yaM>4;EQ`r,@PZZP@,r`QE;">
    </jvxlColorData>
  </jvxlSurfaceData>
 </jvxlSurface>
 
 <jvxlSurface>
  <jvxlSurfaceInfo
    asXML="true"
    cutoff="0.0"
    isCutoffAbsolute="true"
    pointsPerAngstrom="2.8987584"
    isXLowToHigh="false"
    nBytesUncompressedColorData="1008"
    nBytesData="1008"
    colorMapped="true"
    plane="{0.0 1.0 0.0 0.0}"
    precisionColor="true"
    contoured="true"
    nContours="9"
    contourValues="[-3.4028235E38, -0.05, -0.0375, -0.025, -0.012499999, 1.0E-4, 0.012499999, 0.025000002, 3.4028235E38]"
    contourColors="[xff6000] [xffe000] [xf0f000] [x80aa00] [x20aa00] [x00aa60] [x00ffc0] [x00c0ff] [x0060ff]"
    dataMinimum="-0.44280344"
    dataMaximum="0.3196677"
    valueMappedToRed="-0.05"
    valueMappedToBlue="0.05"
    jmolVersion="Jmol 11.9.7_dev  2009-09-20 12:13">
  </jvxlSurfaceInfo>
  <jvxlSurfaceCommand>
    isosurface plane {0 1 0 0} map contour mep;
  </jvxlSurfaceCommand>
  <jvxlSurfaceState>
    isosurface ID "isosurface1" noFill mesh dots notFrontOnly contourlines fullylit
  </jvxlSurfaceState>
  <jvxlSurfaceData>
    <jvxlColorData data="W~9 X~6 YXYX~5 W~13 XXY~5 XXWWWWVWWWXXYZ[[ZYXXWWWVVVVWWXZ!^^!ZXWWV~6 WX[_ff_[XWVVVVUUUUVWZb||bZWVU~5 TTTUV!nn!VUTTTUUTTSSRQPOMMOPQRSSTTTSRQPMIA**AIMPQRSTSSQPNJE;##;EJNPQSSSRQOLHC<44<CHLOQRSSRPNKGB=99=BGKNPRSSQPNKGB>;;>BGKNPQSSQPNKGB>;;>BGKNPQSSRPNKGB=99=BGKNPRSSRQOLHC<44<CHLOQRSSSQPNJE;##;EJNPQSSTSRQPMIA**AIMPQRSTTTSSRQPOMMOPQRSSTTUUTTTUV!nn!VUTTTU~5 VWZb||bZWVUUUUVVVVWX[_ff_[XWV~6 WWXZ!^^!ZXWWVVVVWWWXXYZ[[ZYXXWWWVWWWWXXY~5 XXW~8 XXXYYXXXW~9 X~7 W~4 4;E>QM`ary,=@!PxZ.Z.Px@!,=ry`aQME>;4)4E]%Q*[{{[*Q%]E4)s#5Q$eagRRgae$Q5#s^et8noMcffcMon8te^ABKd@W,ykky,W@dKBAwnjs>KH^||^HK>sjnwN6xc]%gboobg%]cx6NzQy=NSK0]]0KSN=yQzLjwi3mpC%%Cpm3iwjL{.zF/kG-##-Gk/Fz.{WU3<ZoO,@@,OoZ<3UW=1[R^luMDDMul^R[1=0yA06Fk2%%2kF60Ay00yA06Fk2%%2kF60Ay0=1[R^luMDDMul^R[1=WU3<ZoO,@@,OoZ<3UW{.zF/kG-##-Gk/Fz.{Ljwi3mpC%%Cpm3iwjLzQy=NSK0]]0KSN=yQzN6xc]%gboobg%]cx6Nwnjs>KH^||^HK>sjnwABKd@W,ykky,W@dKBA^et8noMcffcMon8te^s#5Q$eagRRgae$Q5#s)4E]%Q*[{{[*Q%]E4)4>May=!x..x!=yaM>4;EQ`r,@PZZP@,r`QE;">
    </jvxlColorData>
  </jvxlSurfaceData>
 </jvxlSurface>
</jvxlSurfaceSet>

</jvxl>

Contributors

AngelHerraez