CdkJmolAdapter
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Class in Jmol that allows CDK classes to be displayed in Jmol. It supports AtomContainer, Molecule, and BioPolymer (at least as read with the PDBReader).
The CdkJmolAdapter also implements Jmol's concept of atomSet: it maps CDK's ChemModel with atomSet, and a ChemSequence with an atomSetCollection.
* CdkJmolAdapter for Jmol 10.2 and CDK from SVN
Jmol 10.00 needs a different version, and was distributed in a number of 10.00.xx development releases.