AtomSets/Popup Menu
Revision as of 18:12, 23 January 2010 by AngelHerraez (talk | contribs) (proposed changes in menu words)
Current pop-up menu (Jmol 11.9.19):
- Select
- Element
- (list of elements present)
- Protein (disabled for non-pdb files)
- By residue name
- (list of amino acid residues present)
- (protein subsets)
- By residue name
- Nucleic (disabled for non-pdb files)
- By residue name
- (list of nucleotide residues present)
- (nucleic subsets)
- By residue name
- Hetero (disabled for non-pdb files)
Proposed change to other more friendly term - which one?- By HETATM
Proposed change to 'By group name'- (list of hetero groups present)
- All PDB "HETATM" - applies script 'select hetero'
Proposed change to 'All hetero' - All solvent - applies script 'select solvent'
- All water - applies script 'select water'
- Ligand - applies script 'select ligand', which is the same as 'select hetero and not solvent'
- Nonaqueous HETATM - applies script 'select hetero and not water'
Proposed change to 'Nonaqueous hetero' - Nonaqueous solvent - applies script 'select solvent and not water'
- By HETATM
- Carbohydrate (disabled for non-pdb files)
- By residue name
- (list of monosaccharide residues present)
- All - applies script 'select carbohydrate'
- By residue name
- None of the above (disabled for non-pdb files) - applies script 'select not(hetero,protein,nucleic,carbohydrate)'
- Element