Jmol Tutorials

Please add here links or information about tutorials designed to learn the use of Jmol, either as final user, script author or web page author.

Jmol / JSmol Tutorials

• A list of Jmol / JSmol Tutorials written by users.
• Using the mouse (English · Español · Français · Japanese).
• Scripting quickstart: rendering options · selecting atoms.
• How to create surfaces and isosurfaces, including cavities, pockets and tunnels.
• Displaying shapes, polyhedra, orbitals, dipoles, distances, forces and vibrations.
• Creating movies.
• Customizing Jmol: macros · menus.
• Web pages without writing code by using the Jmol "Export to Web" function.

Electronic

in English

• Quick Guide for Jmol/JSmol Single-page summary of mouse actions - A. Herráez
• Digital Jmol Training Guide, MSOE Center for BioMolecular Modeling
• Exploring Proteins and Nucleic Acids with Jmol - Jeff Cohlberg, California State University (a 121-page formatted book, available in PDF). A series of self-guided exercises by which students learn how to use Jmol and the PDB as they are learning the principles of protein and nucleic acid structure.
• Summary of JSmol Script Command Expressions and Image Manipulation Operations - Duane W. Sears, University of California Santa Barbara
• Jmol Guide - Karmella Haynes, Arizona State University
• An Introduction to Jmol Scripting - Nathan Silva and David Marcey, part of The Online Macromolecular Museum Exhibits, California Lutheran University.
• Using Jmol Export to Web feature. - A tutorial on making live Jmol pages without writing any .html, css or javascript. Also includes brief introductions to ways of modifying what Jmol displays. Designed as a place to start for student assignments and making web based tutorials. - J. Gutow, Univ. Wisc. Oshkosh.
• Guide to setting up a Jmol web page - Bruce Tattershall, Newcastle University

in German / auf Deutsch

• Virtuelle (Nano) Welten Jmol Tutorial - A. Honegger, Biochemischen Institut, Universität Zürich.

in Spanish / en español

• Guía de iniciación a Jmol/JSmol Resumen de una sola página sobre acciones con el ratón - A. Herráez
• Guía de iniciación a Jmol para usuarios - M.B. Garrido (Valencia) y A. Herráez (Universidad de Alcalá).

On paper

in English

• How to use Jmol to study and present molecular structures, Vol.1

© Angel Herráez, 2007. ISBN 978-1-84799-259-8. Published by Lulu.com. info.

in Spanish / en español

• Cómo utilizar Jmol para estudiar y presentar estructuras moleculares, Vol.1

© Angel Herráez, 2007. ISBN 978-1-84753-710-2. Publicado por Lulu.com. info.

Contributors

AngelHerraez, BruceTattershall, Snehak, Cohlberg, Gutow, Green