Difference between revisions of "Jmol Tutorials"

Revision as of 21:33, 12 September 2017

Please add here links or information about tutorials designed to learn the use of Jmol, either as final user, script author or web page author.

Jmol / JSmol Tutorials

A list of Jmol / JSmol Tutorials written by users.
Using the mouse (English · Español · Français · Japanese).
Scripting quickstart: rendering options · selecting atoms.
How to create surfaces and isosurfaces, including cavities, pockets and tunnels.
Displaying shapes, polyhedra, orbitals, dipoles, distances, forces and vibrations.
Creating movies.
Customizing Jmol: macros · menus.
Web pages without writing code by using the Jmol "Export to Web" function.

Quick Guide for Jmol/JSmol Single-page summary of mouse actions - A. HerrÃ¡ez
Digital Jmol Training Guide, MSOE Center for BioMolecular Modeling
Exploring Proteins and Nucleic Acids with Jmol - Jeff Cohlberg, California State University (a 121-page formatted book, available in PDF). A series of self-guided exercises by which students learn how to use Jmol and the PDB as they are learning the principles of protein and nucleic acid structure.
Summary of JSmol Script Command Expressions and Image Manipulation Operations - Duane W. Sears, University of California Santa Barbara
Jmol Guide - Karmella Haynes, Arizona State University
An Introduction to Jmol Scripting - Nathan Silva and David Marcey, part of The Online Macromolecular Museum Exhibits, California Lutheran University.
Using Jmol Export to Web feature. - A tutorial on making live Jmol pages without writing any .html, css or javascript. Also includes brief introductions to ways of modifying what Jmol displays. Designed as a place to start for student assignments and making web based tutorials. - J. Gutow, Univ. Wisc. Oshkosh.

Virtuelle (Nano) Welten Jmol Tutorial - A. Honegger, Biochemischen Institut, UniversitÃ¤t ZÃ¼rich.

GuÃa de iniciaciÃ³n a Jmol/JSmol Resumen de una sola pÃ¡gina sobre acciones con el ratÃ³n - A. HerrÃ¡ez
GuÃa de iniciaciÃ³n a Jmol para usuarios - M.B. Garrido (Valencia) y A. HerrÃ¡ez (Universidad de AlcalÃ¡).

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 * [https://biosci.mcdb.ucsb.edu/biochemistry/info/scriptguide.htm Summary of JSmol Script Command Expressions and Image Manipulation Operations] - Duane W. Sears, University of California Santa Barbara
 * [http://www.openwetware.org/wiki/Haynes:Jmol_Guide Jmol Guide] - Karmella Haynes, Arizona State University
-* [http://www.callutheran.edu/Academic_Programs/Departments/BioDev/omm/scripting/molmast.htm An Introduction to Jmol Scripting] - Nathan Silva and David Marcey, part of The ''Online Macromolecular Museum Exhibits'', California Lutheran University.
+* [http://earth.callutheran.edu/Academic_Programs/Departments/BioDev/omm/jsmolnew/scripting/molmast.htm An Introduction to Jmol Scripting] - Nathan Silva and David Marcey, part of The ''Online Macromolecular Museum Exhibits'', California Lutheran University.
 * [http://www.uwosh.edu/faculty_staff/gutow/Jmol_Web_Page_Maker/Export_to_web_tutorial.shtml Using Jmol Export to Web feature.] - A tutorial on making live Jmol pages without writing any .html, css or javascript.  Also includes brief introductions to ways of modifying what Jmol displays.  Designed as a place to start for student assignments and making web based tutorials. - J. Gutow, Univ. Wisc. Oshkosh.