Difference between revisions of "Jmol Tutorials"

Revision as of 18:36, 3 December 2014

Please add here links or information about tutorials designed to learn the use of Jmol, either as final user, script author or web page author.

Jmol / JSmol Tutorials

A list of Jmol / JSmol Tutorials written by users.
Using the mouse (English · Español · Français · Japanese).
Scripting quickstart: rendering options · selecting atoms.
How to create surfaces and isosurfaces, including cavities, pockets and tunnels.
Displaying shapes, polyhedra, orbitals, dipoles, distances, forces and vibrations.
Creating movies.
Customizing Jmol: macros · menus.
Web pages without writing code by using the Jmol "Export to Web" function.

Using Jmol Export to Web feature. - A tutorial on making live Jmol pages without writing any .html, css or javascript. Also includes brief introductions to ways of modifying what Jmol displays. Designed as a place to start for student assignments and making web based tutorials. - J. Gutow, Univ. Wisc. Oshkosh.
An Introduction to Jmol Scripting - Nathan Silva and David Marcey, part of The Online Macromolecular Museum Exhibits, California Lutheran University.
Studying Protein and Nucleic Acid Structure with Jmol - Jeffrey A. Cohlberg (California State University, Long Beach) A series of self-guided exercises by which students learn how to use Jmol and the PDB as they are learning the principles of protein and nucleic acid structure. ISBN-13: 978-1-319-01259-5 or 978-1-319-01258-8 (Ebook, Macmillan Education)

Virtuelle (Nano) Welten Jmol Tutorial - A. Honegger, Biochemischen Institut, UniversitÃ¤t ZÃ¼rich.

GuÃa de iniciaciÃ³n a Jmol para usuarios - M.B. Garrido (Valencia) y A. HerrÃ¡ez (Universidad de AlcalÃ¡).

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 * [http://www.uwosh.edu/faculty_staff/gutow/Jmol_Web_Page_Maker/Export_to_web_tutorial.shtml Using Jmol Export to Web feature.] - A tutorial on making live Jmol pages without writing any .html, css or javascript.  Also includes brief introductions to ways of modifying what Jmol displays.  Designed as a place to start for student assignments and making web based tutorials. - J. Gutow, Univ. Wisc. Oshkosh.
 * [http://www.callutheran.edu/Academic_Programs/Departments/BioDev/omm/scripting/molmast.htm An Introduction to Jmol Scripting] - Nathan Silva and David Marcey, part of The ''Online Macromolecular Museum Exhibits'', California Lutheran University.
+* [http://www.macmillanhighered.com/Catalog/product/studyingproteinandnucleicacidstructurewithjmol-firstedition-cohlberg-1 Studying Protein and Nucleic Acid Structure with Jmol] - Jeffrey A. Cohlberg (California State University, Long Beach) A series of self-guided exercises by which students learn how to use Jmol and the PDB as they are learning the principles of protein and nucleic acid structure. ISBN-13: 978-1-319-01259-5 or 978-1-319-01258-8 (Ebook, Macmillan Education)
 === in German / auf Deutsch ===