Difference between revisions of "AtomSets/Carbohydrate"
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== Cathegorized == | == Cathegorized == | ||
=== Monosaccharides === | === Monosaccharides === | ||
| + | <table> | ||
| + | <tr> | ||
| + | <th rowspan="2">glucose</th> | ||
| + | <td rowspan="2">pyranose</td> | ||
| + | <td>α-D-Glc<sub>p</sub></td> | ||
| + | <td>[GLC]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>β-D-Glc<sub>p</sub></td> | ||
| + | <td>[BGC]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <th rowspan="2">fructose</th> | ||
| + | <td>furanose</td> | ||
| + | <td>β-D-Fru<sub>f</sub></td> | ||
| + | <td>[FRU]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>pyranose</td> | ||
| + | <td>β-D-Fru<sub>p</sub></td> | ||
| + | <td>[BDF]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <th rowspan="2">galactose</th> | ||
| + | <td rowspan="2">pyranose</td> | ||
| + | <td>α-D-Gal<sub>p</sub></td> | ||
| + | <td>[GLA]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>β-D-Gal<sub>p</sub></td> | ||
| + | <td>[GAL]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <th rowspan="2">mannose</th> | ||
| + | <td rowspan="2">pyranose</td> | ||
| + | <td>α-D-Man<sub>p</sub></td> | ||
| + | <td>[MAN]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>β-D-Man<sub>p</sub></td> | ||
| + | <td>[BMA]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <th rowspan="3">ribose</th> | ||
| + | <td rowspan="2">furanose</td> | ||
| + | <td>α-D-Rib<sub>f</sub></td> | ||
| + | <td>[RIB]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>β-D-Rib<sub>f</sub></td> | ||
| + | <td>[BDR]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>pyranose</td> | ||
| + | <td>β-D-Rib<sub>p</sub></td> | ||
| + | <td>[RIP]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <th rowspan="4">fucose</th> | ||
| + | <td rowspan="4">pyranose</td> | ||
| + | <td>α-D-Fuc<sub>p</sub></td> | ||
| + | <td>[FCA]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>β-D-Fuc<sub>p</sub></td> | ||
| + | <td>[FCB]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>α-L-Fuc<sub>p</sub></td> | ||
| + | <td>[FUC]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>β-L-Fuc<sub>p</sub></td> | ||
| + | <td>[FUL]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <th rowspan="3">xylose</th> | ||
| + | <td rowspan="3">pyranose</td> | ||
| + | <td>α-D-Xyl<sub>p</sub></td> | ||
| + | <td>[XYS]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>β-D-Xyl<sub>p</sub></td> | ||
| + | <td>[XYP]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>β-L-Xyl<sub>p</sub></td> | ||
| + | <td>[LXC]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <th rowspan="3">arabinose</th> | ||
| + | <td>furanose</td> | ||
| + | <td>α-L-Ara<sub>f</sub></td> | ||
| + | <td>[AHR]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td rowspan="2">pyranose</td> | ||
| + | <td>α-L-Ara<sub>p</sub></td> | ||
| + | <td>[ARA]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>β-L-Ara<sub>p</sub></td> | ||
| + | <td>[ARB]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <th>gulose</th> | ||
| + | <td>pyranose</td> | ||
| + | <td>α-L-Gul<sub>p</sub></td> | ||
| + | <td>[GUP]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <th>rhamnose</th> | ||
| + | <td>pyranose</td> | ||
| + | <td>α-L-Rha<sub>p</sub></td> | ||
| + | <td>[RAM]</td> | ||
| + | </tr> | ||
| + | </table> | ||
| + | |||
| + | === Amino sugars === | ||
| + | [NAG] = β-GlcNAc = N-acetylglucosamine = 2-(acetylamino)-2-deoxy-β-D-glucopyranose | ||
| + | |||
| + | [A2G] = α-GalNAc = N-acetyl-α-D-galactosamine = 2-(acetylamino)-2-deoxy-α-D-galactopyranose | ||
| + | |||
| + | [NGA] = β-GalNAc = N-acetyl-β-D-galactosamine = 2-(acetylamino)-2-deoxy-β-D-galactopyranose | ||
| + | |||
| + | [SIA] = α-NeuNAc = 5-N-acetyl-α-D-neuraminic acid | ||
| + | |||
| + | [SLB] = β-NeuNAc = 5-N-acetyl-β-D-neuraminic acid | ||
| + | |||
| + | === Sugar alcohols === | ||
| + | [MTL] = D-mannitol | ||
| + | |||
| + | [SOR] = D-glucitol = D-sorbitol | ||
| + | |||
| + | [XYL] = D-xylitol | ||
| + | |||
| + | === Sugar acids === | ||
| + | [GCU] = D-glucuronic acid = α-D-glucopyranuronic acid | ||
| + | |||
| + | [RHA] = 6-deoxy-mannose-1'-phosphate | ||
=== Disaccharides === | === Disaccharides === | ||
| + | [MAL] = maltose = [α-D-Glc<sub>p</sub>(1->4)]<sub>2</sub> | ||
| + | |||
[CBI] = cellobiose = [β-D-Glc<sub>p</sub>(1->4)]<sub>2</sub> | [CBI] = cellobiose = [β-D-Glc<sub>p</sub>(1->4)]<sub>2</sub> | ||
| + | |||
| + | [TRE] = trehalose = α-D-Glc<sub>p</sub>(1->1)α-D-Glc<sub>p</sub> | ||
[MAB] = mannobiose = [β-D-Man<sub>p</sub>(1->4)]<sub>2</sub> | [MAB] = mannobiose = [β-D-Man<sub>p</sub>(1->4)]<sub>2</sub> | ||
| − | [ | + | [LBT] = alpha-lactose = β-D-Gal<sub>p</sub>(1->4)α-D-Glc<sub>p</sub> |
| + | |||
| + | [LAT] = beta-lactose = β-D-Gal<sub>p</sub>(1->4)β-D-Glc<sub>p</sub> | ||
[SUC] = sucrose = β-D-Fru<sub>f</sub>(2->1)α-D-Glc<sub>p</sub> | [SUC] = sucrose = β-D-Fru<sub>f</sub>(2->1)α-D-Glc<sub>p</sub> | ||
| − | |||
| − | |||
=== Trisaccharides === | === Trisaccharides === | ||
| − | [ | + | [MLR] = maltotriose = [α-D-Glc<sub>p</sub>(1->4)]<sub>3</sub> |
[CTR] = cellotriose = [β-D-Glc<sub>p</sub>(1->4)]<sub>2</sub>α-D-Glc<sub>p</sub> | [CTR] = cellotriose = [β-D-Glc<sub>p</sub>(1->4)]<sub>2</sub>α-D-Glc<sub>p</sub> | ||
| − | [ | + | [CT3] = beta-cellotriose = [β-D-Glc<sub>p</sub>(1->4)]<sub>3</sub> |
=== Tetrasaccharides === | === Tetrasaccharides === | ||
| + | [MTT] = maltotetraose = [α-D-Glc<sub>p</sub>(1->4)]<sub>4</sub> | ||
| + | |||
[CTT] = cellotetraose = [β-D-Glc<sub>p</sub>(1->4)]<sub>4</sub> | [CTT] = cellotetraose = [β-D-Glc<sub>p</sub>(1->4)]<sub>4</sub> | ||
| − | |||
| − | |||
Revision as of 19:41, 29 June 2011
Contents
'carbohydrate' atom set
Alphabetic
[A2G] = N-acetyl-alpha-D-galactosamine = GalNAc = 2-(acetylamino)-2-deoxy-alpha-D-galactopyranose (see also NGA)
[AFL] = <fucose> obsolete, replaced with FUL
[AGC] = <glucose> obsolete, replaced with GLC
[AHR] = alpha-L-arabinofuranose
[ARA] = alpha-L-arabinopyranose
[ARB] = beta-L-arabinopyranose
[BDF] = beta-D-fructopyranose (see also FRU)
[BDR] = beta-D-ribofuranose
[BGC] = beta-D-glucopyranose (see also GLC)
[BMA] = beta-D-mannopyranose (see also MAN)
[CBI] = cellobiose
[CT3] = beta-cellotriose
[CTR] = cellotriose
[CTT] = cellotetraose
[FCA] = alpha-D-fucose (see also FCB, FUC, FUL)
[FCB] = beta-D-fucose (see also FCA, FUC, FUL)
[FRU] = beta-D-fructofuranose (see also BDF)
[FUC] = alpha-L-fucose (see also FCA, FCB, FUL)
[FUL] = beta-L-fucose (see also FCA, FCB, FUC)
[GAL] = beta-D-galactopyranose (see also GLA)
[GCU] = alpha-D-glucopyranuronic acid (glucuronic acid)
[GLA] = alpha-D-galactopyranose (see also GAL)
[GLB] = <galactose> obsolete, replaced with GAL
[GLC] = alpha-D-glucopyranose (see also BGC)
[GUP] = alpha-L-gulopyranose
[LAT] = beta-lactose
[LXC] = beta-L-xylopyranose
[MAB] = mannobiose
[MAL] = maltose
[MAN] = alpha-D-mannopyranose (see also BMA)
[MLR] = maltotriose
[MTL] = D-mannitol
[MTT] = maltotetraose
[NAG] = N-acetylglucosamine = GlcNAc = 2-(acetylamino)-2-deoxy-beta-D-glucopyranose)
[NAN] = <sialic> obsolete, replaced with SIA
[NGA] = N-acetyl-beta-D-galactosamine = GalNAc = 2-(acetylamino)-2-deoxy-beta-D-galactopyranose (see also A2G)
[RAA] = <rhamnose> obsolete, replaced with RAM
[RAM] = alpha-L-rhamnose
[RHA] = 6-deoxy-mannose-1'-phosphate
[RIB] = alpha-D-ribofuranose
[RIP] = beta-D-ribopyranose
[SIA] = 5-N-acetyl-alpha-D-neuraminic acid (see also SLB)
[SLB] = 5-N-acetyl-beta-D-neuraminic acid (see also SIA)
[SOR] = D-glucitol = D-sorbitol
[SUC] = sucrose
[TRE] = trehalose
[XYL] = D-xylitol
[XYP] = beta-D-xylopyranose
[XYS] = alpha-D-xylopyranose
Cathegorized
Monosaccharides
| glucose | pyranose | α-D-Glcp | [GLC] |
|---|---|---|---|
| β-D-Glcp | [BGC] | ||
| fructose | furanose | β-D-Fruf | [FRU] |
| pyranose | β-D-Frup | [BDF] | |
| galactose | pyranose | α-D-Galp | [GLA] |
| β-D-Galp | [GAL] | ||
| mannose | pyranose | α-D-Manp | [MAN] |
| β-D-Manp | [BMA] | ||
| ribose | furanose | α-D-Ribf | [RIB] |
| β-D-Ribf | [BDR] | ||
| pyranose | β-D-Ribp | [RIP] | |
| fucose | pyranose | α-D-Fucp | [FCA] |
| β-D-Fucp | [FCB] | ||
| α-L-Fucp | [FUC] | ||
| β-L-Fucp | [FUL] | ||
| xylose | pyranose | α-D-Xylp | [XYS] |
| β-D-Xylp | [XYP] | ||
| β-L-Xylp | [LXC] | ||
| arabinose | furanose | α-L-Araf | [AHR] |
| pyranose | α-L-Arap | [ARA] | |
| β-L-Arap | [ARB] | ||
| gulose | pyranose | α-L-Gulp | [GUP] |
| rhamnose | pyranose | α-L-Rhap | [RAM] |
Amino sugars
[NAG] = β-GlcNAc = N-acetylglucosamine = 2-(acetylamino)-2-deoxy-β-D-glucopyranose
[A2G] = α-GalNAc = N-acetyl-α-D-galactosamine = 2-(acetylamino)-2-deoxy-α-D-galactopyranose
[NGA] = β-GalNAc = N-acetyl-β-D-galactosamine = 2-(acetylamino)-2-deoxy-β-D-galactopyranose
[SIA] = α-NeuNAc = 5-N-acetyl-α-D-neuraminic acid
[SLB] = β-NeuNAc = 5-N-acetyl-β-D-neuraminic acid
Sugar alcohols
[MTL] = D-mannitol
[SOR] = D-glucitol = D-sorbitol
[XYL] = D-xylitol
Sugar acids
[GCU] = D-glucuronic acid = α-D-glucopyranuronic acid
[RHA] = 6-deoxy-mannose-1'-phosphate
Disaccharides
[MAL] = maltose = [α-D-Glcp(1->4)]2
[CBI] = cellobiose = [β-D-Glcp(1->4)]2
[TRE] = trehalose = α-D-Glcp(1->1)α-D-Glcp
[MAB] = mannobiose = [β-D-Manp(1->4)]2
[LBT] = alpha-lactose = β-D-Galp(1->4)α-D-Glcp
[LAT] = beta-lactose = β-D-Galp(1->4)β-D-Glcp
[SUC] = sucrose = β-D-Fruf(2->1)α-D-Glcp
Trisaccharides
[MLR] = maltotriose = [α-D-Glcp(1->4)]3
[CTR] = cellotriose = [β-D-Glcp(1->4)]2α-D-Glcp
[CT3] = beta-cellotriose = [β-D-Glcp(1->4)]3
Tetrasaccharides
[MTT] = maltotetraose = [α-D-Glcp(1->4)]4
[CTT] = cellotetraose = [β-D-Glcp(1->4)]4
