Difference between revisions of "Jmol Tutorials"

Revision as of 16:50, 14 July 2022

Please add here links or information about tutorials designed to learn the use of Jmol, either as final user, script author or web page author.

Jmol / JSmol Tutorials

A list of Jmol / JSmol Tutorials written by users.
Using the mouse (English · Español · Français · Japanese).
Scripting quickstart: rendering options · selecting atoms.
How to create surfaces and isosurfaces, including cavities, pockets and tunnels.
Displaying shapes, polyhedra, orbitals, dipoles, distances, forces and vibrations.
Creating movies.
Customizing Jmol: macros · menus.
Web pages without writing code by using the Jmol "Export to Web" function.

Jmol tutorials for self-learning-Snehalatha

Quick Guide for Jmol/JSmol Single-page summary of mouse actions - A. Herráez
Digital Jmol Training Guide, MSOE Center for BioMolecular Modeling
Exploring Proteins and Nucleic Acids with Jmol - Jeff Cohlberg, California State University (a 121-page formatted book, available in PDF). A series of self-guided exercises by which students learn how to use Jmol and the PDB as they are learning the principles of protein and nucleic acid structure.
Summary of JSmol Script Command Expressions and Image Manipulation Operations - Duane W. Sears, University of California Santa Barbara
Jmol Guide - Karmella Haynes, Arizona State University
An Introduction to Jmol Scripting - Nathan Silva and David Marcey, part of The Online Macromolecular Museum Exhibits, California Lutheran University.
Using Jmol Export to Web feature. - A tutorial on making live Jmol pages without writing any .html, css or javascript. Also includes brief introductions to ways of modifying what Jmol displays. Designed as a place to start for student assignments and making web based tutorials. - J. Gutow, Univ. Wisc. Oshkosh.
Guide to setting up a Jmol web page - Bruce Tattershall, Newcastle University

Virtuelle (Nano) Welten Jmol Tutorial - A. Honegger, Biochemischen Institut, Universität Zürich.

Guía de iniciación a Jmol/JSmol Resumen de una sola página sobre acciones con el ratón - A. Herráez
Guía de iniciación a Jmol para usuarios - M.B. Garrido (Valencia) y A. Herráez (Universidad de Alcalá).

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 === in English ===
+Jmol tutorials for self-learning-Snehalatha
 * [http://biomodel.uah.es/en/DIY/Jmol/help/inicio.en.htm Quick Guide for Jmol/JSmol] Single-page summary of mouse actions - A. Herráez
 * [http://cbm.msoe.edu/crest/crestJmolResources.php Digital Jmol Training Guide], MSOE Center for BioMolecular Modeling