Difference between revisions of "AtomSets/Popup Menu"
Jump to navigation
Jump to search
AngelHerraez (talk | contribs) (filling content) |
AngelHerraez (talk | contribs) (proposed changes in menu words) |
||
| Line 14: | Line 14: | ||
**** (list of nucleotide residues present) | **** (list of nucleotide residues present) | ||
*** (nucleic subsets) | *** (nucleic subsets) | ||
| − | ** '''Hetero''' (disabled for non-pdb files) | + | ** '''Hetero''' (disabled for non-pdb files)<br />Proposed change to other more friendly term - which one? |
| − | *** By HETATM | + | *** By HETATM<br />Proposed change to 'By group name' |
**** (list of hetero groups present) | **** (list of hetero groups present) | ||
| − | *** All PDB "HETATM" - applies script 'select hetero' | + | *** All PDB "HETATM" - applies script 'select hetero'<br />Proposed change to 'All hetero' |
*** All solvent - applies script 'select solvent' | *** All solvent - applies script 'select solvent' | ||
*** All water - applies script 'select water' | *** All water - applies script 'select water' | ||
*** Ligand - applies script 'select ligand', which is the same as 'select hetero and not solvent' | *** Ligand - applies script 'select ligand', which is the same as 'select hetero and not solvent' | ||
| − | *** Nonaqueous HETATM - applies script 'select hetero and not water' | + | *** Nonaqueous HETATM - applies script 'select hetero and not water'<br />Proposed change to 'Nonaqueous hetero' |
*** Nonaqueous solvent - applies script 'select solvent and not water' | *** Nonaqueous solvent - applies script 'select solvent and not water' | ||
** '''Carbohydrate''' (disabled for non-pdb files) | ** '''Carbohydrate''' (disabled for non-pdb files) | ||
Revision as of 18:12, 23 January 2010
Current pop-up menu (Jmol 11.9.19):
- Select
- Element
- (list of elements present)
- Protein (disabled for non-pdb files)
- By residue name
- (list of amino acid residues present)
- (protein subsets)
- By residue name
- Nucleic (disabled for non-pdb files)
- By residue name
- (list of nucleotide residues present)
- (nucleic subsets)
- By residue name
- Hetero (disabled for non-pdb files)
Proposed change to other more friendly term - which one?- By HETATM
Proposed change to 'By group name'- (list of hetero groups present)
- All PDB "HETATM" - applies script 'select hetero'
Proposed change to 'All hetero' - All solvent - applies script 'select solvent'
- All water - applies script 'select water'
- Ligand - applies script 'select ligand', which is the same as 'select hetero and not solvent'
- Nonaqueous HETATM - applies script 'select hetero and not water'
Proposed change to 'Nonaqueous hetero' - Nonaqueous solvent - applies script 'select solvent and not water'
- By HETATM
- Carbohydrate (disabled for non-pdb files)
- By residue name
- (list of monosaccharide residues present)
- All - applies script 'select carbohydrate'
- By residue name
- None of the above (disabled for non-pdb files) - applies script 'select not(hetero,protein,nucleic,carbohydrate)'
- Element
