Difference between revisions of "Jmol Tutorials"
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=== in English === | === in English === | ||
| + | * [https://spoken-tutorial.org/tutorial-search/?search_foss=Jmol+Application&search_language=English Jmol Video Tutorials for self-learning] - Snehalatha Kaliappan, Spoken Tutorial Project, IIT Bombay, Mumbai, India | ||
| + | * [http://biomodel.uah.es/en/DIY/Jmol/help/inicio.en.htm Quick Guide for Jmol/JSmol] Single-page summary of mouse actions - A. Herráez | ||
| + | * [http://cbm.msoe.edu/crest/crestJmolResources.php Digital Jmol Training Guide], MSOE Center for BioMolecular Modeling | ||
| + | * [http://web.csulb.edu/~cohlberg/Jmolmanual.html Exploring Proteins and Nucleic Acids with Jmol] - Jeff Cohlberg, California State University (a 121-page formatted book, available in PDF). A series of self-guided exercises by which students learn how to use Jmol and the PDB as they are learning the principles of protein and nucleic acid structure. | ||
| + | * [https://biosci.mcdb.ucsb.edu/biochemistry/info/scriptguide.htm Summary of JSmol Script Command Expressions and Image Manipulation Operations] - Duane W. Sears, University of California Santa Barbara | ||
| + | * [http://www.openwetware.org/wiki/Haynes:Jmol_Guide Jmol Guide] - Karmella Haynes, Arizona State University | ||
| + | * [http://earth.callutheran.edu/Academic_Programs/Departments/BioDev/omm/jsmolnew/scripting/molmast.htm An Introduction to Jmol Scripting] - Nathan Silva and David Marcey, part of The ''Online Macromolecular Museum Exhibits'', California Lutheran University. | ||
* [http://www.uwosh.edu/faculty_staff/gutow/Jmol_Web_Page_Maker/Export_to_web_tutorial.shtml Using Jmol Export to Web feature.] - A tutorial on making live Jmol pages without writing any .html, css or javascript. Also includes brief introductions to ways of modifying what Jmol displays. Designed as a place to start for student assignments and making web based tutorials. - J. Gutow, Univ. Wisc. Oshkosh. | * [http://www.uwosh.edu/faculty_staff/gutow/Jmol_Web_Page_Maker/Export_to_web_tutorial.shtml Using Jmol Export to Web feature.] - A tutorial on making live Jmol pages without writing any .html, css or javascript. Also includes brief introductions to ways of modifying what Jmol displays. Designed as a place to start for student assignments and making web based tutorials. - J. Gutow, Univ. Wisc. Oshkosh. | ||
| − | * [ | + | * [https://teaching.ncl.ac.uk/chemmodels/jmolapps/index.html Guide to setting up a Jmol web page] - Bruce Tattershall, Newcastle University |
| − | |||
=== in German / auf Deutsch === | === in German / auf Deutsch === | ||
| − | * [ | + | * [https://www.bioc.uzh.ch/plueckthun/nanowelt/Jmol/Tutorial1/ Virtuelle (Nano) Welten Jmol Tutorial] - A. Honegger, Biochemischen Institut, Universität Zürich. |
| − | === in Spanish / en | + | === in Spanish / en español === |
| − | * [http://biomodel.uah.es/Jmol/jmolguia/ | + | * [http://biomodel.uah.es/en/DIY/Jmol/help/inicio.es.htm Guía de iniciación a Jmol/JSmol] Resumen de una sola página sobre acciones con el ratón - A. Herráez |
| + | * [http://biomodel.uah.es/Jmol/jmolguia/ Guía de iniciación a Jmol para usuarios] - M.B. Garrido (Valencia) y A. Herráez (Universidad de Alcalá). | ||
== On paper == | == On paper == | ||
| Line 19: | Line 26: | ||
=== in English === | === in English === | ||
* How to use Jmol to study and present molecular structures, Vol.1 | * How to use Jmol to study and present molecular structures, Vol.1 | ||
| − | : | + | : © Angel Herráez, 2007. <nowiki>ISBN 978-1-84799-259-8</nowiki>. Published by Lulu.com. [http://biomodel.uah.es/Jmol-handbook.htm info]. |
| − | === in Spanish / en | + | === in Spanish / en español === |
| − | * | + | * Cómo utilizar Jmol para estudiar y presentar estructuras moleculares, Vol.1 |
| − | : | + | : © Angel Herráez, 2007. <nowiki>ISBN 978-1-84753-710-2</nowiki>. Publicado por Lulu.com. [http://biomodel.uah.es/Jmol-manual.htm info]. |
Latest revision as of 17:40, 28 July 2022
Please add here links or information about tutorials designed to learn the use of Jmol, either as final user, script author or web page author.
- A list of Jmol / JSmol Tutorials written by users.
- Using the mouse (English · Español · Français · Japanese).
- Scripting quickstart: rendering options · selecting atoms.
- How to create surfaces and isosurfaces, including cavities, pockets and tunnels.
- Displaying shapes, polyhedra, orbitals, dipoles, distances, forces and vibrations.
- Creating movies.
- Customizing Jmol: macros · menus.
- Web pages without writing code by using the Jmol "Export to Web" function.
Contents
Electronic
in English
- Jmol Video Tutorials for self-learning - Snehalatha Kaliappan, Spoken Tutorial Project, IIT Bombay, Mumbai, India
- Quick Guide for Jmol/JSmol Single-page summary of mouse actions - A. Herráez
- Digital Jmol Training Guide, MSOE Center for BioMolecular Modeling
- Exploring Proteins and Nucleic Acids with Jmol - Jeff Cohlberg, California State University (a 121-page formatted book, available in PDF). A series of self-guided exercises by which students learn how to use Jmol and the PDB as they are learning the principles of protein and nucleic acid structure.
- Summary of JSmol Script Command Expressions and Image Manipulation Operations - Duane W. Sears, University of California Santa Barbara
- Jmol Guide - Karmella Haynes, Arizona State University
- An Introduction to Jmol Scripting - Nathan Silva and David Marcey, part of The Online Macromolecular Museum Exhibits, California Lutheran University.
- Using Jmol Export to Web feature. - A tutorial on making live Jmol pages without writing any .html, css or javascript. Also includes brief introductions to ways of modifying what Jmol displays. Designed as a place to start for student assignments and making web based tutorials. - J. Gutow, Univ. Wisc. Oshkosh.
- Guide to setting up a Jmol web page - Bruce Tattershall, Newcastle University
in German / auf Deutsch
- Virtuelle (Nano) Welten Jmol Tutorial - A. Honegger, Biochemischen Institut, Universität Zürich.
in Spanish / en español
- Guía de iniciación a Jmol/JSmol Resumen de una sola página sobre acciones con el ratón - A. Herráez
- Guía de iniciación a Jmol para usuarios - M.B. Garrido (Valencia) y A. Herráez (Universidad de Alcalá).
On paper
in English
- How to use Jmol to study and present molecular structures, Vol.1
- © Angel Herráez, 2007. ISBN 978-1-84799-259-8. Published by Lulu.com. info.
in Spanish / en español
- Cómo utilizar Jmol para estudiar y presentar estructuras moleculares, Vol.1
- © Angel Herráez, 2007. ISBN 978-1-84753-710-2. Publicado por Lulu.com. info.
Contributors
AngelHerraez, BruceTattershall, Snehak, Cohlberg, Gutow, Green
