MediaWiki/Basic Example

This page demonstrates basic uses of the Jmol MediaWiki extension.

These are new tags introduced in the 3.3_dev version of the Jmol MediaWiki Extension. They all open a new (pop-up) window filled with a JmolApplet. The applet will fit the window, which is resizable.

Examples with <jmolFile>

This feature is currently under development.

This tag creates a link that opens a JmolApplet and loads the model from a file that has been previously uploaded to the wiki. The model is displayed in the default rendering (ball and stick, CPK color, black background).

The code <jmolFile>Chair.cml</jmolFile> gives Chair.cml to display molecular data from File:Chair.cml.

The code <jmolFile text="Show ethanol">Ethanol.xyz</jmolFile> gives Show ethanol to display molecular data from File:Ethanol.xyz.

Examples with <jmolPdb>

This feature is currently under development.

This tag creates a link that opens a JmolApplet and loads a model from the PDB database server. The model is displayed in the default rendering (ball and stick, CPK color, black background).

The code <jmolPdb>1ALE</jmolPdb> gives 1ALE to display 1ALE molecular data directly from Protein Data Bank.

The code <jmolPdb text="Show 1ALE">1ALE</jmolPdb> gives Show 1ALE to display 1ALE molecular data directly from Protein Data Bank.

Examples with <jmolSmiles>

This feature is currently under development.

This tag creates a link that opens a JmolApplet and loads a model from the Cactus NIH server, constructed from a SMILES string, CAS number, InChI key or chemical name. The model is displayed in the default rendering (ball and stick, CPK color, black background).

The code <jmolSmiles>CCCNC</jmolSmiles> gives CCCNC to display molecular data directly associated to SMILES string CCCNC.

The code <jmolSmiles>aspirin</jmolSmiles> gives aspirin to display molecular data associated to that name.

The code <jmolSmiles text="Show CCCNC">CCCNC</jmolSmiles> gives Show CCCNC to display molecular data directly associated to SMILES string CCCNC.

Contributors

NicolasVervelle, AngelHerraez