Difference between revisions of "Talk:AtomSets"
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AngelHerraez (talk | contribs) (Draft for 'carbohydrate' atom set) |
AngelHerraez (talk | contribs) (→Draft for 'carbohydrate' atom set) |
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| Line 21: | Line 21: | ||
[BDR] | [BDR] | ||
[BGC] | [BGC] | ||
| − | [BMA] | + | [BMA] = beta-D-mannose |
[CBI] | [CBI] | ||
[CT3] | [CT3] | ||
| Line 31: | Line 31: | ||
[FUC] = fucose | [FUC] = fucose | ||
[FUL] | [FUL] | ||
| − | [GAL] = galactose | + | [GAL] = beta-D-galactose |
[GCU] | [GCU] | ||
| − | [GLA] = alpha-galactose | + | [GLA] = alpha-D-galactose |
| − | [GLB] | + | [GLB] = beta-D-galactose (obsolete, replaced with GAL) |
| − | [GLC] = glucose | + | [GLC] = beta-D-glucose |
[GUP] | [GUP] | ||
[LAT] | [LAT] | ||
| Line 41: | Line 41: | ||
[MAB] | [MAB] | ||
[MAL] | [MAL] | ||
| − | [MAN] = mannose | + | [MAN] = alpha-D-mannose |
[MLR] | [MLR] | ||
[MTL] | [MTL] | ||
| Line 59: | Line 59: | ||
[XYS] | [XYS] | ||
</pre> | </pre> | ||
| − | Not currently recognized: | + | Not currently recognized by Jmol: |
<pre> | <pre> | ||
[SIA] = 5-N-acetyl-alpha-D-neuraminic acid | [SIA] = 5-N-acetyl-alpha-D-neuraminic acid | ||
[SLB] = 5-N-acetyl-beta-D-neuraminic acid | [SLB] = 5-N-acetyl-beta-D-neuraminic acid | ||
</pre> | </pre> | ||
Revision as of 10:39, 28 June 2011
This page started by AngelHerraez, 5 June 2006. Initial clue came from Tim Driscoll, who pointed me to JmolConstants.java as the source for this information.
This needs an update and fixes (e.g. purine and pyrimidine seem to be based on structure, not IDs).
Also, the current subsections are somewhat confusing. Maybe change them into
- by chemical structure
- by atom IDs
--AngelHerraez 18:05, 23 January 2010 (UTC)
Draft for 'carbohydrate' atom set
[AFL] = alpha-L-fucose (obsolete, replaced with FUL) [AGC] = alpha-D-glucose (obsolete, replaced with GLC) [AHR] = alpha-L-arabinofuranose [ARA] = alpha-L-arabinopyranose [ARB] = beta-L-arabinopyranose [ASF] [BDF] [BDR] [BGC] [BMA] = beta-D-mannose [CBI] [CT3] [CTR] [CTT] [FCA] [FCB] [FRU] [FUC] = fucose [FUL] [GAL] = beta-D-galactose [GCU] [GLA] = alpha-D-galactose [GLB] = beta-D-galactose (obsolete, replaced with GAL) [GLC] = beta-D-glucose [GUP] [LAT] [LXC] [MAB] [MAL] [MAN] = alpha-D-mannose [MLR] [MTL] [MTT] [NAG] = Nácetylglucosamine [NAM] [RAA] [RAM] [RHA] [RIB] [RIP] [SOR] [SUC] [TRE] [XYL] = xylose [XYP] [XYS]
Not currently recognized by Jmol:
[SIA] = 5-N-acetyl-alpha-D-neuraminic acid [SLB] = 5-N-acetyl-beta-D-neuraminic acid
