View source for AtomSets/Popup Menu

= Selection of atom sets from the pop-up menu =

Pop-up menu (as of Jmol 11.9.19):
[[File:Popup_select_submenu.gif]]
* '''Select'''
** '''Element'''
*** (list of elements present)
** '''Protein''' (disabled for non-pdb files)
*** By residue name
**** (list of amino acid residues present)
*** (protein subsets)
** '''Nucleic''' (disabled for non-pdb files)
*** By residue name
**** (list of nucleotide residues present)
*** (nucleic subsets)
** '''Hetero''' (disabled for non-pdb files)<br />Proposed change to other more friendly term - which one?
*** By HETATM<br />Proposed change to 'By group name'
**** (list of hetero groups present)
*** All PDB "HETATM" - applies script <code>select hetero</code><br />Proposed change to 'All hetero'
*** All solvent - applies script <code>select solvent</code>
*** All water - applies script <code>select water</code>
*** Ligand - applies script <code>select ligand</code>, which is the same as <code>select hetero and not solvent</code>
*** Nonaqueous HETATM - applies script <code>select hetero and not water</code><br />Proposed change to 'Nonaqueous hetero'
*** Nonaqueous solvent - applies script <code>select solvent and not water</code>
** '''Carbohydrate''' (disabled for non-pdb files)
*** By residue name
**** (list of monosaccharide residues present)
*** All - applies script <code>select carbohydrate</code>
** '''None of the above''' (disabled for non-pdb files) - applies script <code>select not(hetero,protein,nucleic,carbohydrate)</code>